ApplySegmentationNetwork

segments data using net. Data can be an array or a nii file path. Net can be a network name, file, or NetGraph.

returns the network output at the specified intermediate node rather than the final segmentation.

processes all nii files in datFol and saves results to outFol.

ApplySegmentationNetwork[{{datFol,outFol},{inTag,outTag}},net]

uses custom file tags to find input and name output files.

QMRITools`

ApplySegmentationNetwork

segments data using net. Data can be an array or a nii file path. Net can be a network name, file, or NetGraph.

returns the network output at the specified intermediate node rather than the final segmentation.

processes all nii files in datFol and saves results to outFol.

ApplySegmentationNetwork[{{datFol,outFol},{inTag,outTag}},net]

uses custom file tags to find input and name output files.

Details

DataPadding	0	DataPadding is an option for ApplySegmentationNetwork. Defines how much to pad the data patches in all directions.
MaxPatchSize	Automatic	MaxPatchSize is an option for SegmentData and ApplySegmentationNetwork. Defines the maximum memory a patch can use in Gb. Higher is better.
Monitor	False	Monitor[expr,mon] generates a temporary monitor cell in which the continually updated current value of mon is displayed during the course of evaluation of expr.