FiberTractography

FiberTractography[tensor,vox]

performs fiber tractography on the tensor with voxel dimensions vox.

FiberTractography[tensor,vox,{par,{min,max}}]

performs fiber tractography on the tensor with voxel dimensions vox with additional stopping criteria par, where tracts are only generated between values of par min and max.

FiberTractography[tensor,vox,{{par,{min,max}},..}]

performs fiber tractography on the tensor with voxel dimensions vox with multiple additional stopping criteria.

Details
Details and Options Details and Options
QMRITOOLS SYMBOL
QMRITools`
QMRITools`

FiberTractography

FiberTractography[tensor,vox]

performs fiber tractography on the tensor with voxel dimensions vox.

FiberTractography[tensor,vox,{par,{min,max}}]

performs fiber tractography on the tensor with voxel dimensions vox with additional stopping criteria par, where tracts are only generated between values of par min and max.

FiberTractography[tensor,vox,{{par,{min,max}},..}]

performs fiber tractography on the tensor with voxel dimensions vox with multiple additional stopping criteria.

Details

  • The following options can be given:
  • FiberLengthRange{20, 500}FiberLengthRange is an option for FiberTractography and specifies the allowed tract range.
    FiberAngle30FiberAngle is an option for FiberTractography and specifies the allowed angle change per tract step.
    TensorFlips{1, 1, 1}TensorFlips is an option for FiberTractography and specifies if the tensor orientation is flipped, see FlipTensorOrientation.
    TensorPermutations{x, y, z}TensorPermutations is an option for FiberTractography and specifies if the tensor orientation is permuted, see FlipTensorOrientation.
    InterpolationOrder0InterpolationOrder is an option for Interpolation, as well as ListLinePlot, ListPlot3D, ListContourPlot, and related functions, that specifies what order of interpolation to use.
    StopThreshold0.5StopThreshold is an option for FiberTractography and defines the stop threshold which is a value between 0 and 1.
    StepSizeAutomaticStepSize is an option for FiberTractography and defines the tractography step size.
    Method"RK4"Method is an option for various algorithm-intensive functions that specifies what internal methods they should use.
    MaxSeedPointsAutomaticMaxSeedPoints is an option for FiberTractography and defines the maximum number of seed points to be used.
    TractMonitorTrueTractMonitor is an option for FiberTractography. When set True it prints the progress.
    ParallelizationFalseParallelization is an option for Compile that specifies whether it should create a compiled function that could run in parallel.