SegmentationTools

Demonstrations.nb ››
Guide page ›› Code on Github ››

This toolbox provides functions to perform automated muscle segmentation. For this trained convolutional neural network using the UNET architecture are included. Currently we support the segmentations of 14 leg and 17 thigh muscles as well as segmentation of all lower extremity bones. Back››

flowchart for whole leg automated muscle segmentation

muscle segmentation using convolutional neural network

References

Ronneberger O, Fischer P, Brox T (2015) U-net: Convolutional networks for biomedical image segmentation. 9351:234–241. link››
Rohm M, Markmann M, Forsting J, Rehmann R, Froeling M, Schlaffke L. (2021). 3D automated segmentation of lower leg muscles using machine learning on a heterogeneous dataset. Diagnostics. 11(10):1747. link››