QMRITools`
QMRITools`
FindTensorPermutation
FindTensorPermutation[tensor,vox]
performs tractography for all tensor permutations and gives back the one that has the longest tracts.
FindTensorPermutation[tensor,vox,{par,{min,max}}]
same but with additional stoppin criteria par, where tracts are only generated between values of par min and max.
FindTensorPermutation[tensor,vox,{{par,{min,max}},..}]
same but with with multiple additional stopping criteria. Ouput = {permutations, flips, plot}
is based on DOI: 10.1016/j.media.2014.05.012.
Details
- The following options can be given:
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FiberLengthRange {20, 500} FiberLengthRange is an option for FiberTractography and specifies the allowed tract range. FiberAngle 30 FiberAngle is an option for FiberTractography and specifies the allowed angle change per tract step. InterpolationOrder 0 InterpolationOrder is an option for Interpolation, as well as ListLinePlot, ListPlot3D, ListContourPlot, and related functions, that specifies what order of interpolation to use. StopThreshhold 0.5 StopThreshhold is an option for FiberTractography and defines the stop threshhold which is a value between 0 and 1. StepSize 2 StepSize is an option for FiberTractography and defines the tractography step size. Method "Euler" Method is an option for various algorithm-intensive functions that specifies what internal methods they should use. MaxSeedPoints 500 MaxSeedPoints is an option for FiberTractography and defines the maximum number of seedspoints to be used.