FindTensorPermutation

FindTensorPermutation[tensor,vox]

performs tractography for all tensor permutations and gives back the one that has the longest tracts.

FindTensorPermutation[tensor,vox,{par,{min,max}}]

same but with additional stopping criteria par, where tracts are only generated between values of par min and max.

FindTensorPermutation[tensor,vox,{{par,{min,max}},..}]

same but with multiple additional stopping criteria. Output = {permutations, flips, plot}

FindTensorPermutation[]

is based on DOI: 10.1016/j.media.2014.05.012.

Details
Details and Options Details and Options
QMRITOOLS SYMBOL
QMRITools`
QMRITools`

FindTensorPermutation

FindTensorPermutation[tensor,vox]

performs tractography for all tensor permutations and gives back the one that has the longest tracts.

FindTensorPermutation[tensor,vox,{par,{min,max}}]

same but with additional stopping criteria par, where tracts are only generated between values of par min and max.

FindTensorPermutation[tensor,vox,{{par,{min,max}},..}]

same but with multiple additional stopping criteria. Output = {permutations, flips, plot}

FindTensorPermutation[]

is based on DOI: 10.1016/j.media.2014.05.012.

Details

  • The following options can be given:
  • FiberLengthRange{20, 500}FiberLengthRange is an option for FiberTractography and specifies the allowed tract range.
    FiberAngle30FiberAngle is an option for FiberTractography and specifies the allowed angle change per tract step.
    InterpolationOrder0InterpolationOrder is an option for Interpolation, as well as ListLinePlot, ListPlot3D, ListContourPlot, and related functions, that specifies what order of interpolation to use.
    StopThreshold0.5StopThreshold is an option for FiberTractography and defines the stop threshold which is a value between 0 and 1.
    StepSizeAutomaticStepSize is an option for FiberTractography and defines the tractography step size.
    Method"Euler"Method is an option for various algorithm-intensive functions that specifies what internal methods they should use.
    MaxSeedPoints500MaxSeedPoints is an option for FiberTractography and defines the maximum number of seed points to be used.