Documentation and installation

The toolbox always works within the latest version of Mathematica and does not support any backward compatibility. After the toolbox is installed correctly it should show up as a package in the Mathematica add-ons.

Installation

The installation manual can be found here.

What’s new

A summary of the changes in QMRITools 5 can be found here.

Manuals and scripts

The Muscle-BIDS manual, example configurations, command line scripts for installation and segmentation, and demonstration notebooks are listed here.

Demonstrations

The tool includes demonstration code and data which can be found here.

Documentation

A notebook with all functions and their description can be found here. Documentation of all functions and their options is fully integrated in the Mathematica documentation. An online version of the full documentation can be found here.